There’s nothing better than a soft, fluffy muffin packed with melty chocolate chips! These Mini Chocolate Chip Muffins are the perfect bite-sized treat for busy mornings, lunchboxes, or an afternoon snack.

I love taking processed foods that my kids see in the grocery store and trying to make a better version of it. That was what I did with this recipe. My kids love the little muffins that come in the package but that list of ingredients is very questionable- so I started playing around with ingredients and that was when this recipe was created.
Anytime I can add Greek yogurt to a recipe I do. I love having some extra protein in these muffins to help keep my kids fuller for a bit longer while snacking. These mini muffins are a staple in our home because they’re quick to make, easy to grab, and loved by both kids and adults!
Why You’ll Love this Recipe
Quick and Easy: This recipe literally is done in under 20 minutes and just mix all your ingredients up in a bowl and pour the batter into a muffin tin. You’ll be enjoying these mini muffins before you know it.
Healthier Twist: With the addition of Greek yogurt you are adding protein to these muffins keeping them nice and fluffy without having to add any oils.
Perfect for Meal Prep: These muffins are a great option to prep and snack on throughout the week. Throw them in a lunchbox or purse for a great on the go snack.
Ingredients Breakdown

Flour: All-purpose flour keeps them light and fluffy, but you can swap for gluten-free if needed.
Greek Yogurt: Adds moisture, protein, and a slight tang for balance.
Butter: For rich flavor and tenderness.
Egg: Helps bind everything together and adds structure.
Cane Sugar: Just enough sweetness without being overpowering.
Baking Powder & Baking Soda: Ensures a nice rise for soft, fluffy muffins.
Mini Chocolate Chips: The star of the show! Mini chips mean chocolate in every bite.
Tool You’ll Need
- Mixing bowls
- Whisk & spatula
- Mini muffin tin
- Measuring cups & spoons
- Cookie scoop (optional, but helps with even portioning)
How to Make The Best Mini Chocolate Chip Muffin
1. Preheat your Oven
Preheat your oven to 350°F (175°C). Line a mini muffin tin with paper liners or grease it well. I prefer to use a silicon muffin pan for easy removal of my muffins.
2. Mix Dry Ingredients

In a medium bowl, whisk together the flour, baking powder, baking soda, and salt.
3. Combine Wet Ingredients

In a separate large bowl, mix the melted butter, cane sugar, Greek yogurt, egg, and vanilla extract until smooth and well combined.
4. Incorporate Dry Ingredients

Slowly fold the dry ingredients into the wet ingredients, mixing until just combined. Avoid overmixing.
5. Add Chocolate Chips

Gently fold in the mini chocolate chips until evenly distributed.
6. Fill Muffin Tins

Using a spoon or a small cookie scoop, fill each muffin cup about 3/4 full with the batter.
7. Bake the Muffins
Bake for 10-12 minutes or until a toothpick inserted into the center comes out clean or with just a few moist crumbs.
8. Cool Completely
Let the muffins cool in the pan for 5 minutes before transferring them to a wire rack to cool completely. Enjoy once they are cooled!
Tips for the Perfect Mini Muffins
- Don’t overmix your batter. If you do you will have a more dense muffin when you want a light and fluffy muffin.
- Make sure to use a full-fat Greek yogurt for the best texture and flavor.
- Sprinkle the top of your muffins with a few extra chocolate chips before baking to get a bakery-style muffin.
- Let your mini chocolate chip muffins cool in the pan for 5 minutes before transferring to a rack so that they don’t become soggy.
Frequently Asked Questions
Can I use regular chocolate chips?
Yes you can! I would just chop them up in smaller pieces so that you get more chocolate in every bite.
Can I make these regular sized muffins?
Yes, To do this line a muffin tin with liners and fill 3/4 of the way full. Bake at 350°F for about 18-20 minutes or when a toothpick inserted in the middle comes out clean. This recipe will make 12 regular sized muffins.
How do I store them?
Make sure your muffins are in an airtight container. They can be stored at room temperature for up to 3 days or make a double batch and pop them in the freezer for up to 2 months.
Serving Suggestions

- These are great for a quick breakfast on the go. Pair them with a glass of milk or coffee. My kids love them with delicious homemade chocolate milk.
- Serve these mini chocolate chip muffins as an afternoon snack with fresh fruit and cheese.
- They make a great lunchbox addition for kids or adults.
If you enjoyed this recipe, I’d be so grateful if you could take a moment to leave a 5-star rating below! Be sure to tag me @simplychelseahome on Instagram so I can see your delicious results!

Mini Chocolate Chip Muffins
Ingredients
Method
- Preheat oven to 350°F (175°C) and line a mini muffin tin with liners or grease it.
- In a medium bowl, whisk together the flour, baking powder, baking soda, and salt.
- In a separate large bowl, mix melted butter, sugar, Greek yogurt, egg, and vanilla until smooth.
- Gradually mix the dry ingredients into the wet ingredients until just combined (do not overmix).
- Stir in the mini chocolate chips.
- Spoon the batter into the mini muffin tin, filling each about ¾ full.
- Bake for 10-12 minutes or until a toothpick inserted in the center comes out clean.
- Let muffins cool in the pan for 5 minutes before transferring to a wire rack. Enjoy when cooled.
Notes
- Use full-fat Greek yogurt for the best texture.
- Add a few extra mini chocolate chips on top before baking for a bakery-style look.
- Store in an airtight container for up to 3 days or freeze for longer storage.
- Use a silicone mini muffin pan for easy removal of muffins.
Love this! I might try to whip up a batch before my little nephew comes over to our house today!
If you do I would love to know how they turn out! My kids love them!
My boys would love these! Sounds delicious!
My boys gobble them up! I love knowing they have better ingredients and some added protein! Thank you and I hope you try them!
These are so cute and I love the ingredients and size. The perfect snack for little ones!
Thank you so much! My kids love them! I have to double the batch!
These look so good and so cute! Thanks for sharing the recipe!